A List of Ships/Stations that each Weapon would go best with (Stock Only).

TYPE-IX PHASERS:
Cargo Ship
Colony Ship
Construction Ship
Steamrunner Class (The Artillary Torps. are supposed to drain a LOT of power, so higher Phasers shouldn't be sustainable)
Saber Class
Mining Freighter
Venture Class
Repair Ship

TYPE-X PHASERS:
Akira Class
Intrepid Class
Aegian Class
Galaxy Class - Complete
Galaxy Class - Stardrive Section
Galaxy Class - Saucer Section
Nebula Class

TYPE-XI PHASERS:
*NONE*, but they could be used for custom Ships like the Galaxy Refit, or downloaded Ships.

TYPE-XII PHASERS:
Sovereign Class

TYPE-XIII
Starbase
Starfleet Command (fbaseHQ.odf)

PHOTON TORPEDOS:
Akira Class
Intrepid Class
Saber Class
Aegian Class
Galaxy Class - Complete
Galaxy Class - Stardrive Section
Nebula Class

QUANTUM TORPEDOS:
Defiant Class
Sovereign Class
Torpedo Turret

MICRO-PHOTON TORPEDOS:
Venture Class